Overview
Rice (Oryza sativa) is a staple food for over half of the global population, and its genetic improvement is critical for food security. Rice genome sequencing involves determining the complete DNA sequence of the rice genome, which is approximately 430 Mb in size. At 30X coverage, each base is sequenced on average 30 times, ensuring high accuracy and reliability for detecting genetic variants. Variant calling identifies single nucleotide polymorphisms (SNPs), insertions/deletions (indels), and structural variants compared to a reference genome. These variants can be linked to important agronomic traits such as yield, disease resistance, drought tolerance, and nutritional quality. DNA Labs India offers this advanced genomic service to support researchers, breeders, and agricultural institutions in accelerating crop improvement programs. The service includes DNA extraction, library preparation, sequencing, bioinformatics analysis, and a comprehensive report with annotated variants. This enables precise marker-assisted selection and genomic selection strategies, ultimately contributing to sustainable agriculture and food security.
To be completed — reclassified from Tests on 2026-11-13.
The purpose of rice genome sequencing and variant calling is to provide a comprehensive genetic map of an individual rice plant or variety. This information is used to identify genes and genetic variations associated with desirable traits, such as high yield, pest and disease resistance, and improved nutritional content. It also helps in understanding the genetic diversity within rice populations, which is essential for conservation and breeding programs. By comparing the sequenced genome to a reference, researchers can pinpoint mutations that may be responsible for specific phenotypes, facilitating functional genomics studies. Ultimately, this service aims to accelerate the development of improved rice varieties that can withstand environmental stresses and meet the demands of a growing population.
Sample requirements
What to send us
Deliverables & turnaround
What you receive
Turnaround: Reports are delivered within 8 weeks from the date of sample receipt.
Pricing
Transparent pricing
| Option | Turnaround | Price (INR) | Unit |
|---|---|---|---|
| Standard | Reports are delivered within 8 weeks fro... | ₹0 | per sample |
Limitations & precautions
What this service cannot do
Questions customers ask
Frequently asked questions
What is the cost of Rice Genome Sequencing and Variant Calling-30X?
The test is currently offered at a discounted price of INR 0 (original price INR 60,000) as part of a promotional offer. Please contact DNA Labs India for more details.
What does 30X coverage mean?
30X coverage means that each base in the rice genome is sequenced on average 30 times, ensuring high accuracy and reliability for variant detection.
What type of sample is required?
The test requires extracted DNA from rice leaf tissue or seeds. The DNA should be of high quality and quantity (?1 µg).
How long does it take to get results?
The turnaround time is approximately 8 weeks from the date of sample receipt.
Can this test be used for human genetic testing?
No, this test is specifically for rice genome analysis and is not intended for human diagnostics.
What kind of variants can be detected?
The test can detect single nucleotide polymorphisms (SNPs), insertions/deletions (indels), and structural variants across the rice genome.
Is home sample collection available?
Yes, we offer free home sample collection for online bookings across India. However, for this test, the sample is extracted DNA, so you may need to send the DNA sample via courier.
What is the difference between this test and exome sequencing?
Whole genome sequencing covers the entire genome, including non-coding regions, while exome sequencing only targets protein-coding regions. Whole genome provides more comprehensive data.
Can this test help in breeding programs?
Yes, the identified variants can be used for marker-assisted selection and genomic selection to accelerate breeding for desired traits.
What is the quality of DNA required?
DNA should have an A260/280 ratio between 1.8 and 2.0, and a concentration of at least 50 ng/µL. Total quantity should be ?1 µg.
How are the results delivered?
Results are delivered via email, WhatsApp, and the online portal. A detailed report with annotated variants is provided.
Is this test NABL accredited?
Yes, DNA Labs India is NABL accredited and ISO certified, ensuring high-quality testing standards.
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